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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
DNase-seq
133
ChIP-seq
26
total RNA-seq
14
ATAC-seq
7
WGBS
2
single cell RNA-seq
1
FAIRE-seq
Assay category
211
DNA accessibility
133
DNA binding
28
Transcription
7
DNA methylation
Target of assay
68
transcription factor
51
histone
51
histone modification
26
narrow histone mark
25
RNA binding protein
25
broad histone mark
16
recombinant protein
14
control
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
377
bam
362
bigWig
329
bed narrowPeak
297
bigBed narrowPeak
196
bed bed3+
196
bed broadPeak
196
bigBed broadPeak
161
fastq
26
tsv
7
bed bedMethyl
7
bigBed bedMethyl
2
csv
Organism
379
Homo sapiens
Biosample type
189
tissue
129
primary cell
61
cell line
Organ
83
pancreas
81
epithelium
81
kidney
55
liver
43
musculature of body
35
heart
32
brain
32
limb
19
connective tissue
18
ureter
15
blood
15
bodily fluid
9
spleen
7
eye
7
vasculature
5
blood vessel
2
adipose tissue
2
artery
Project
379
AMP
Genome assembly (visualization)
361
GRCh38
330
hg19
Lab
379
AMP-T2D consortium
Audit category:
26
inconsistent ontology term
Audit category:
35
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
379 results
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Clear Filters
DNase-seq
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
FAIRE-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 23 more…
cell line
HepG2
45
1
GM12878
15
See all biosamples
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