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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
DNase-seq
101
ChIP-seq
3
WGBS
1
single cell RNA-seq
Assay category
188
DNA accessibility
101
DNA binding
3
DNA methylation
1
Transcription
Target of assay
68
transcription factor
25
RNA binding protein
19
histone
19
histone modification
16
recombinant protein
14
control
11
narrow histone mark
8
broad histone mark
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
406
November, 2017
341
May, 2020
338
May, 2021
314
August, 2021
297
February, 2021
295
October, 2019
213
June, 2019
166
August, 2017
148
February, 2023
118
May, 2019
96
May, 2022
94
December, 2017
90
July, 2019
80
April, 2019
80
November, 2018
49
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
22
February, 2020
19
April, 2020
17
October, 2017
14
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2021
7
January, 2018
6
November, 2020
5
March, 2023
5
November, 2019
2
June, 2018
1
October, 2022
1
September, 2018
Available data
292
bam
277
bigWig
274
bed narrowPeak
274
bigBed narrowPeak
188
bed bed3+
188
bed broadPeak
188
bigBed broadPeak
80
fastq
3
bed bedMethyl
3
bigBed bedMethyl
1
csv
Organism
293
Homo sapiens
Biosample type
176
tissue
61
cell line
56
primary cell
Organ
81
kidney
55
liver
43
musculature of body
35
heart
32
brain
32
limb
20
epithelium
19
connective tissue
18
ureter
15
blood
15
bodily fluid
pancreas
9
spleen
7
eye
7
vasculature
5
blood vessel
adipose tissue
2
artery
Project
293
AMP
Genome assembly (visualization)
277
GRCh38
251
hg19
Lab
293
AMP-T2D consortium
Audit category:
26
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
organ_slims!
adipose tissue
pancreas
BIOSAMPLE
ASSAY
293 results
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Clear Filters
DNase-seq
ChIP-seq
WGBS
single cell RNA-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 34 more…
cell line
HepG2
45
1
GM12878
15
primary cell
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac muscle cell
1
3
epithelial cell of proximal tubule
1
3
+ See 18 more…
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