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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
120
ChIP-seq
8
ATAC-seq
2
total RNA-seq
Assay category
195
DNA accessibility
120
DNA binding
2
Transcription
Target of assay
61
histone
61
histone modification
40
control
37
broad histone mark
24
narrow histone mark
19
transcription factor
15
RNA binding protein
Date released
715
February, 2021
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
November, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
309
bam
271
bigWig
267
bed narrowPeak
261
bigBed narrowPeak
191
bed broadPeak
187
bed bed3+
187
bigBed broadPeak
77
fastq
14
tagAlign
2
tsv
Organism
317
Homo sapiens
Biosample type
260
tissue
57
primary cell
Organ
81
kidney
62
pancreas
46
brain
43
musculature of body
42
connective tissue
35
heart
32
limb
25
adipose tissue
22
epithelium
18
ureter
7
eye
7
vasculature
5
blood vessel
2
artery
2
liver
1
spleen
Project
317
AMP
Genome assembly (visualization)
271
GRCh38
247
hg19
Lab
316
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
26
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
month_released!
August, 2017
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
317 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
total RNA-seq
tissue
body of pancreas
2
33
4
brain
12
15
heart
18
muscle of arm
17
endocrine pancreas
16
+ See 38 more…
primary cell
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac muscle cell
1
3
epithelial cell of proximal tubule
1
3
+ See 18 more…
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