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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
180
DNase-seq
78
ChIP-seq
26
total RNA-seq
22
ATAC-seq
1
single cell RNA-seq
Assay category
202
DNA accessibility
78
DNA binding
27
Transcription
Target of assay
63
histone
63
histone modification
35
broad histone mark
28
narrow histone mark
11
control
4
RNA binding protein
4
transcription factor
Date released
649
February, 2021
411
August, 2017
400
November, 2017
399
May, 2021
341
May, 2020
313
August, 2021
267
October, 2019
211
June, 2019
200
May, 2022
170
February, 2023
168
July, 2018
96
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
70
May, 2019
61
November, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
298
bam
289
bigWig
261
bed narrowPeak
223
bigBed narrowPeak
184
bed broadPeak
180
bed bed3+
180
bigBed broadPeak
90
fastq
26
tsv
14
tagAlign
1
csv
Organism
307
Homo sapiens
Biosample type
183
tissue
124
primary cell
Organ
81
epithelium
81
kidney
81
pancreas
46
brain
43
musculature of body
35
heart
32
limb
19
connective tissue
18
ureter
7
eye
vasculature
5
blood vessel
2
adipose tissue
2
artery
2
liver
1
spleen
Project
307
AMP
Genome assembly (visualization)
289
GRCh38
266
hg19
Lab
306
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
25
inconsistent ontology term
Audit category:
36
missing controlled_by
organ_slims!
vasculature
BIOSAMPLE
ASSAY
307 results
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Clear Filters
DNase-seq
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
tissue
brain
12
15
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
+ See 34 more…
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 19 more…
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