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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
153
DNase-seq
105
ChIP-seq
47
single cell RNA-seq
2
total RNA-seq
Assay category
153
DNA accessibility
105
DNA binding
49
Transcription
Target of assay
49
histone
49
histone modification
37
control
27
broad histone mark
22
narrow histone mark
19
transcription factor
15
RNA binding protein
Date released
649
February, 2021
411
August, 2017
399
May, 2021
341
May, 2020
315
November, 2017
313
August, 2021
200
May, 2022
184
June, 2019
181
October, 2019
169
February, 2023
168
July, 2018
94
December, 2017
86
November, 2018
80
April, 2019
80
July, 2019
76
October, 2018
73
September, 2018
61
November, 2019
59
September, 2020
58
March, 2020
49
April, 2018
47
September, 2023
42
May, 2019
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
10
February, 2020
8
January, 2018
7
August, 2020
7
October, 2017
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
260
bam
223
bigWig
221
bed narrowPeak
221
bigBed narrowPeak
153
bed bed3+
153
bed broadPeak
153
bigBed broadPeak
60
fastq
2
tsv
Organism
307
Homo sapiens
Biosample type
256
tissue
51
primary cell
Organ
128
kidney
57
pancreas
43
musculature of body
41
connective tissue
35
heart
32
limb
brain
24
adipose tissue
22
epithelium
18
ureter
7
eye
7
vasculature
blood vessel
2
artery
2
liver
Project
260
AMP
47
KPMP
Genome assembly (visualization)
223
GRCh38
211
hg19
Lab
260
AMP-T2D consortium
47
KPMP
Audit category:
26
inconsistent ontology term
Audit category:
1
inconsistent control read length
organ_slims!
blood vessel
brain
BIOSAMPLE
ASSAY
307 results
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Clear Filters
DNase-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
tissue
kidney
13
47
body of pancreas
2
33
heart
18
muscle of arm
17
endocrine pancreas
16
+ See 21 more…
primary cell
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac muscle cell
1
3
epithelial cell of proximal tubule
1
3
+ See 12 more…
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