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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
315
ChIP-seq
4
ATAC-seq
1
Hi-C
Assay category
315
DNA binding
4
DNA accessibility
1
3D chromatin structure
Target of assay
241
transcription factor
66
recombinant protein
56
control
34
RNA binding protein
15
chromatin remodeller
15
histone
15
histone modification
8
broad histone mark
7
narrow histone mark
2
other context
2
other post-translational modification
Date released
715
February, 2021
411
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
315
November, 2017
228
October, 2019
204
February, 2023
200
May, 2022
188
June, 2019
168
July, 2018
94
December, 2017
92
May, 2019
90
July, 2019
86
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
62
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
13
February, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
7
October, 2017
5
March, 2019
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
316
fastq
315
bam
268
bigWig
249
bed narrowPeak
249
bigBed narrowPeak
59
bed broadPeak
58
bigBed broadPeak
12
tagAlign
3
tar
1
bedpe
1
hic
Organism
320
Homo sapiens
Biosample type
315
cell line
5
tissue
Organ
315
liver
brain
6
epithelium
6
vasculature
5
pancreas
3
blood vessel
Project
320
AMP
Genome assembly (visualization)
269
hg19
219
GRCh38
Lab
315
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
month_released!
March, 2023
organ_slims!
brain
BIOSAMPLE
ASSAY
320 results
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Clear Filters
ChIP-seq
ATAC-seq
Hi-C
cell line
HepG2
315
tissue
islet of Langerhans
4
1
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