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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
single cell RNA-seq
30
pCHi-C
30
total RNA-seq
22
snATAC-seq
20
ATAC-seq
9
Hi-C
Assay category
64
Transcription
42
DNA accessibility
9
3D chromatin structure
Date released
406
November, 2017
341
May, 2020
338
May, 2021
314
August, 2021
297
February, 2021
295
October, 2019
213
June, 2019
166
August, 2017
148
February, 2023
118
May, 2019
96
May, 2022
94
December, 2017
90
July, 2019
80
April, 2019
80
November, 2018
49
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
22
February, 2020
19
April, 2020
17
October, 2017
14
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2021
7
January, 2018
6
November, 2020
5
March, 2023
5
November, 2019
2
June, 2018
1
October, 2022
1
September, 2018
Available data
54
zippedFastqFolder
38
tsv
30
bigWig
20
bed narrowPeak
11
bedpe bed3+
10
bam
9
hic
2
ibed
1
bed bed3+
1
txt
Organism
145
Homo sapiens
Biosample type
72
tissue
55
primary cell
8
in vitro differentiated cells
6
cell line
4
stem cell
Organ
pancreas
86
epithelium
43
liver
7
heart
7
musculature of body
4
blood vessel
4
vasculature
2
brain
2
connective tissue
2
intestine
2
kidney
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
91
AMP
54
HPAP
Genome assembly (visualization)
42
hg19
10
GRCh38
Lab
54
Klaus Kaestner, Upenn
51
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
12
inconsistent ontology term
1
audit script error
organ_slims!
adipose tissue
pancreas
BIOSAMPLE
ASSAY
145 results
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single cell RNA-seq
pCHi-C
total RNA-seq
snATAC-seq
ATAC-seq
Hi-C
tissue
liver
1
21
20
1
psoas muscle
1
2
2
aorta
1
1
1
heart left ventricle
1
1
1
heart right ventricle
1
1
1
+ See 14 more…
primary cell
Langerhans cell
33
21
endothelial cell of umbilical vein
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
cell line
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
fibroblast cell line
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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