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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
315
ChIP-seq
1
Hi-C
1
pCHi-C
1
total RNA-seq
Assay category
315
DNA binding
1
3D chromatin structure
1
Transcription
Target of assay
241
transcription factor
66
recombinant protein
56
control
34
RNA binding protein
15
chromatin remodeller
15
histone
15
histone modification
8
broad histone mark
7
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
53
November, 2018
40
May, 2022
35
August, 2021
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
315
bam
315
fastq
269
bigWig
249
bed narrowPeak
249
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
12
tagAlign
3
tar
2
tsv
1
bedpe bed3+
1
hic
Organism
318
Homo sapiens
Biosample type
315
cell line
3
tissue
Organ
318
liver
93
brain
14
pancreas
12
epithelium
10
vasculature
7
blood vessel
7
heart
5
musculature of body
2
connective tissue
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
318
AMP
Genome assembly (visualization)
268
hg19
218
GRCh38
Lab
318
AMP-T2D consortium
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
month_released!
January, 2018
July, 2019
BIOSAMPLE
ASSAY
318 results
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ChIP-seq
Hi-C
pCHi-C
total RNA-seq
cell line
HepG2
315
tissue
liver
1
1
1
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