Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
pCHi-C
16
total RNA-seq
10
MeRIP-seq
6
Hi-C
5
ATAC-seq
3
ChIP-seq
1
DNase-seq
Assay category
16
Transcription
6
3D chromatin structure
6
DNA accessibility
3
DNA binding
Target of assay
5
control
5
nucleotide modification
3
histone
3
histone modification
3
narrow histone mark
Date released
649
February, 2021
411
August, 2017
400
November, 2017
396
May, 2021
341
May, 2020
259
October, 2019
221
August, 2021
200
May, 2022
178
June, 2019
169
February, 2023
168
July, 2018
94
December, 2017
79
November, 2018
76
October, 2018
74
July, 2019
73
September, 2018
61
November, 2019
59
September, 2020
54
May, 2019
52
March, 2020
49
April, 2018
47
September, 2023
39
February, 2018
28
December, 2018
23
April, 2019
23
January, 2019
22
October, 2017
20
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
41
tsv
22
bigWig
19
bam
8
bedpe bed3+
6
hic
5
bed narrowPeak
2
ibed
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
68
Homo sapiens
Biosample type
33
tissue
17
cell line
8
in vitro differentiated cells
6
primary cell
4
stem cell
Organ
24
pancreas
12
epithelium
8
connective tissue
heart
5
musculature of body
4
blood vessel
vasculature
3
liver
2
brain
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
61
AMP
7
T1D
Genome assembly (visualization)
31
hg19
19
GRCh38
Lab
58
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
23
inconsistent ontology term
organ_slims!
heart
spleen
vasculature
BIOSAMPLE
ASSAY
68 results
search-icon
table-tab-icon
Clear Filters
pCHi-C
total RNA-seq
MeRIP-seq
Hi-C
ATAC-seq
ChIP-seq
DNase-seq
tissue
islet of Langerhans
2
4
2
2
psoas muscle
1
2
2
liver
1
1
1
pancreas
1
1
1
Ammon's horn
1
+ See 11 more…
cell line
EndoC_BH1
2
6
2
1
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
primary cell
osteoblast
4
1
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
Download