Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 6pCHi-C
  • 5total RNA-seq
  • 2ATAC-seq
  • 2Hi-C
  • 1ChIP-seq
Assay category
  • 5Transcription
  • 23D chromatin structure
  • 2DNA accessibility
  • 1DNA binding
Target of assay
  • 1histone
  • 1histone modification
  • 1narrow histone mark
Date released
  • 295November, 2017
  • 74October, 2019
  • 62November, 2018
  • 59December, 2017
  • 56May, 2020
  • 32February, 2021
  • 32June, 2019
  • 28December, 2018
  • 24July, 2019
  • 23August, 2017
  • 23November, 2019
  • 21January, 2019
  • 18August, 2021
  • 16March, 2020
  • 14May, 2019
  • 14May, 2021
  • 7December, 2019
  • 7October, 2018
  • 6February, 2023
  • 6November, 2020
  • 3January, 2021
  • 1April, 2019
  • 1July, 2018
Available data
  • 10tsv
  • 8bigWig
  • 6bam
  • 4bedpe bed3+
  • 2hic
  • 2ibed
  • 1bed narrowPeak
Organism
  • 16Homo sapiens
Biosample type
  • 10cell line
  • 6in vitro differentiated cells
Organ
  • 5epithelium
  • 5pancreas
  • 2kidney
  • 1mammary gland
Project
  • 13AMP
  • 3T1D
Genome assembly (visualization)
  • 12hg19
  • 6GRCh38
Lab
  • 16AMP-T2D consortium
Audit category:
  • 13inconsistent ontology term
BIOSAMPLE
ASSAY

16 results

search-icontable-tab-icon
Clear Filters
pCHi-C
total RNA-seq
ATAC-seq
Hi-C
ChIP-seq
cell line
EndoC_BH1221
MCF-71
RCC 7860 VHL1
RCC 7860 vector1
early embryonic cell1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)111
lymphocyte of B lineage (iPSC)111
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego