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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
ChIP-seq
25
ATAC-seq
22
total RNA-seq
3
Hi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
53
DNA binding
26
Transcription
25
DNA accessibility
3
3D chromatin structure
Target of assay
40
histone
40
histone modification
25
broad histone mark
15
narrow histone mark
13
control
transcription factor
7
RNA binding protein
Date released
383
May, 2021
341
May, 2020
324
February, 2021
319
August, 2017
307
August, 2021
306
October, 2019
213
June, 2019
204
February, 2023
200
May, 2022
168
July, 2018
162
November, 2017
115
May, 2019
96
July, 2019
74
April, 2019
73
September, 2018
63
March, 2020
59
November, 2019
59
September, 2020
52
December, 2017
49
April, 2018
47
September, 2023
43
October, 2018
39
February, 2018
35
May, 2024
23
February, 2020
23
November, 2018
22
October, 2017
19
April, 2020
16
January, 2019
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
December, 2018
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
100
bam
65
bed narrowPeak
62
bigWig
30
bigBed narrowPeak
27
fastq
22
tsv
3
hic
2
bedpe bed3+
Organism
103
Homo sapiens
Biosample type
80
tissue
17
cell line
5
in vitro differentiated cells
3
primary cell
2
stem cell
Organ
97
pancreas
adipose tissue
19
connective tissue
17
epithelium
Project
102
AMP
4
community
1
ITG
Genome assembly (visualization)
89
hg19
88
GRCh38
Lab
102
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
20
inconsistent ontology term
Audit category:
1
inconsistent control read length
organ_slims!
adipose tissue
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
107 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
tissue
islet of Langerhans
19
19
1
body of pancreas
24
endocrine pancreas
16
pancreas
1
cell line
EndoC_BH1
12
1
1
1
EndoC-BH1
1
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
primary cell
pancreatic acinar cell
2
chondrocytes
1
stem cell
SB Ad3.1
1
1
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