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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
8
ATAC-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
13
DNA binding
8
DNA accessibility
4
Transcription
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
10
broad histone mark
3
control
narrow histone mark
Date released
715
February, 2021
368
November, 2017
335
May, 2021
323
August, 2017
314
May, 2020
308
August, 2021
207
June, 2019
205
February, 2023
200
May, 2022
173
October, 2019
168
July, 2018
108
July, 2019
88
November, 2018
86
May, 2019
78
December, 2017
65
October, 2018
61
March, 2020
59
September, 2020
58
September, 2018
57
April, 2019
57
November, 2019
49
April, 2018
47
September, 2023
35
December, 2018
February, 2018
27
January, 2019
25
February, 2020
25
May, 2024
21
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
16
fastq
14
bam
13
bigWig
12
tagAlign
11
bed narrowPeak
5
bigBed narrowPeak
3
bed broadPeak
1
hic
Organism
22
Homo sapiens
Biosample type
21
tissue
2
cell line
2
stem cell
1
primary cell
Organ
14
brain
5
pancreas
1
adipose tissue
1
connective tissue
1
spleen
Project
21
AMP
4
community
1
ITG
Genome assembly (visualization)
14
GRCh38
12
hg19
Lab
20
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
1
Stephen Parker, UMich
Audit category:
3
missing controlled_by
month_released!
February, 2018
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
26 results
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Clear Filters
ChIP-seq
ATAC-seq
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
tissue
brain
13
body of pancreas
4
cerebellum (Hemisphere)
1
islet of Langerhans
1
omental fat pad
1
+ See 1 more…
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
primary cell
chondrocytes
1
See all biosamples
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