Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
97
ChIP-seq
77
ATAC-seq
41
WGBS
34
single cell RNA-seq
26
total RNA-seq
22
snATAC-seq
Assay category
99
DNA accessibility
97
DNA binding
60
Transcription
41
DNA methylation
Target of assay
92
histone
92
histone modification
58
broad histone mark
34
narrow histone mark
control
5
RNA binding protein
5
transcription factor
Date released
712
February, 2021
390
May, 2021
361
August, 2017
335
November, 2017
May, 2020
307
August, 2021
275
October, 2019
210
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
105
July, 2019
97
May, 2019
82
November, 2018
73
December, 2017
73
September, 2018
66
April, 2019
64
March, 2020
59
November, 2019
59
September, 2020
49
April, 2018
47
October, 2018
47
September, 2023
40
May, 2024
31
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
November, 2020
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
135
bed narrowPeak
134
zippedFastqFolder
121
bam
117
bigWig
97
bigBed narrowPeak
24
fastq
7
txt
1
bed bed3+
Organism
297
Homo sapiens
Biosample type
159
tissue
138
primary cell
Organ
105
pancreas
84
epithelium
40
liver
39
blood vessel
39
vasculature
25
brain
15
heart
8
musculature of body
6
limb
4
kidney
3
artery
Project
163
AMP
134
HPAP
Genome assembly (visualization)
136
hg19
96
GRCh38
Lab
134
Klaus Kaestner, Upenn
99
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
1
audit script error
month_released!
May, 2020
target.investigated_as!
control
BIOSAMPLE
ASSAY
297 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
tissue
liver
20
20
islet of Langerhans
18
6
ascending aorta
13
temporal lobe
13
angular gyrus
12
+ See 9 more…
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
kidney epithelial cell
4
pancreatic acinar cell
4
See all biosamples
Download