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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
283
ChIP-seq
8
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
283
DNA binding
9
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
transcription factor
180
histone
180
histone modification
108
broad histone mark
100
control
82
recombinant protein
72
narrow histone mark
63
RNA binding protein
22
chromatin remodeller
5
other context
5
other post-translational modification
Date released
383
May, 2021
341
May, 2020
324
February, 2021
319
August, 2017
307
August, 2021
306
October, 2019
213
June, 2019
204
February, 2023
200
May, 2022
168
July, 2018
162
November, 2017
115
May, 2019
96
July, 2019
74
April, 2019
73
September, 2018
63
March, 2020
59
November, 2019
59
September, 2020
52
December, 2017
49
April, 2018
47
September, 2023
43
October, 2018
39
February, 2018
35
May, 2024
23
February, 2020
23
November, 2018
22
October, 2017
19
April, 2020
16
January, 2019
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
December, 2018
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
286
bam
202
bigWig
178
bed narrowPeak
177
bigBed narrowPeak
103
fastq
78
tagAlign
31
bed broadPeak
25
bigBed broadPeak
8
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
300
Homo sapiens
Biosample type
211
tissue
78
cell line
11
primary cell
Organ
118
brain
78
liver
51
vasculature
49
blood vessel
19
heart
9
pancreas
8
epithelium
7
limb
7
musculature of body
6
spleen
4
artery
4
kidney
3
blood
3
bodily fluid
adipose tissue
1
connective tissue
Project
300
AMP
Genome assembly (visualization)
182
GRCh38
144
hg19
Lab
300
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
organ_slims!
adipose tissue
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
300 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
tissue
layer of hippocampus
22
ascending aorta
15
caudate nucleus
15
substantia nigra
15
temporal lobe
15
+ See 17 more…
cell line
HepG2
74
1
GM12878
3
primary cell
kidney epithelial cell
4
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
pancreatic cell
1
See all biosamples
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