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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
140
ChIP-seq
10
DNase-seq
10
MeRIP-seq
7
WGBS
4
total RNA-seq
1
ATAC-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
140
DNA binding
12
DNA accessibility
7
DNA methylation
5
Transcription
Target of assay
66
transcription factor
56
histone
56
histone modification
36
broad histone mark
23
RNA binding protein
23
control
20
narrow histone mark
16
recombinant protein
7
chromatin remodeller
5
nucleotide modification
3
other context
3
other post-translational modification
Date released
649
February, 2021
411
August, 2017
403
November, 2017
399
May, 2021
341
May, 2020
313
August, 2021
267
October, 2019
213
June, 2019
200
May, 2022
170
February, 2023
168
July, 2018
97
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
70
May, 2019
61
November, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
163
bam
143
bigWig
133
bed narrowPeak
132
bigBed narrowPeak
88
fastq
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
4
tsv
1
csv
Organism
174
Homo sapiens
Biosample type
95
tissue
67
cell line
12
primary cell
Organ
53
liver
blood vessel
50
vasculature
30
brain
21
heart
19
pancreas
15
blood
15
bodily fluid
11
epithelium
9
spleen
7
connective tissue
7
limb
7
musculature of body
5
artery
5
kidney
1
adipose tissue
Project
174
AMP
Genome assembly (visualization)
142
GRCh38
135
hg19
Lab
164
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
9
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
174 results
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Clear Filters
ChIP-seq
DNase-seq
MeRIP-seq
WGBS
total RNA-seq
ATAC-seq
FAIRE-seq
single cell RNA-seq
tissue
temporal lobe
15
angular gyrus
13
germinal matrix
12
right atrium auricular region
10
spleen
6
1
2
+ See 9 more…
cell line
HepG2
45
1
GM12878
15
EndoC_BH1
6
primary cell
osteoblast
1
4
1
kidney epithelial cell
5
pancreatic cell
1
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