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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
121
ChIP-seq
10
MeRIP-seq
6
ATAC-seq
4
total RNA-seq
1
DNase-seq
Assay category
121
DNA binding
7
DNA accessibility
4
Transcription
Target of assay
92
histone
92
histone modification
58
broad histone mark
34
control
34
narrow histone mark
RNA binding protein
5
nucleotide modification
5
transcription factor
Date released
715
February, 2021
403
August, 2017
394
May, 2021
369
November, 2017
341
May, 2020
318
August, 2021
314
October, 2019
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
115
May, 2019
108
July, 2019
90
December, 2017
76
April, 2019
73
September, 2018
65
October, 2018
64
March, 2020
60
November, 2019
59
September, 2020
54
November, 2018
49
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
25
February, 2020
23
October, 2017
19
April, 2020
16
November, 2020
15
May, 2023
12
January, 2019
11
September, 2017
10
December, 2019
8
December, 2018
8
January, 2021
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
132
bam
102
bigWig
99
bed narrowPeak
98
bigBed narrowPeak
11
fastq
4
tsv
3
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
142
Homo sapiens
Biosample type
121
tissue
15
primary cell
6
cell line
Organ
47
blood vessel
47
vasculature
28
brain
23
pancreas
19
heart
15
epithelium
7
limb
7
musculature of body
6
connective tissue
4
artery
4
kidney
Project
142
AMP
Genome assembly (visualization)
105
hg19
104
GRCh38
Lab
132
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
8
inconsistent ontology term
organ_slims!
bodily fluid
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
142 results
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Clear Filters
ChIP-seq
MeRIP-seq
ATAC-seq
total RNA-seq
DNase-seq
tissue
ascending aorta
15
temporal lobe
15
thoracic aorta
15
angular gyrus
13
aorta
13
+ See 7 more…
primary cell
osteoblast
1
4
1
kidney epithelial cell
4
pancreatic alpha cell
2
pancreatic beta cell
2
pancreatic acinar cell
1
cell line
EndoC_BH1
6
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