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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
ChIP-seq
40
single cell RNA-seq
16
total RNA-seq
3
ATAC-seq
Assay category
62
DNA binding
56
Transcription
3
DNA accessibility
Target of assay
92
histone
92
histone modification
broad histone mark
34
narrow histone mark
23
control
5
RNA binding protein
5
transcription factor
Date released
715
February, 2021
356
November, 2017
341
May, 2020
323
May, 2021
August, 2021
302
August, 2017
259
October, 2019
210
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
108
July, 2019
88
November, 2018
79
December, 2017
64
March, 2020
62
May, 2019
59
September, 2020
57
October, 2018
56
September, 2018
55
November, 2019
49
April, 2018
47
September, 2023
43
April, 2019
35
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
May, 2024
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
13
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
62
bam
42
bigWig
41
fastq
39
bed narrowPeak
39
bigBed narrowPeak
19
zippedFastqFolder
Organism
121
Homo sapiens
Biosample type
62
primary cell
59
tissue
Organ
28
blood vessel
28
vasculature
22
epithelium
21
pancreas
14
heart
13
brain
5
artery
3
kidney
3
limb
3
musculature of body
Project
62
AMP
59
HPAP
Genome assembly (visualization)
41
GRCh38
39
hg19
Lab
62
AMP-T2D consortium
59
Klaus Kaestner, Upenn
Audit category:
3
inconsistent ontology term
month_released!
August, 2021
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
121 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
kidney epithelial cell
3
pancreatic beta cell
1
1
tissue
thoracic aorta
9
ascending aorta
8
temporal lobe
7
angular gyrus
6
aorta
6
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