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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
365
ChIP-seq
190
total RNA-seq
100
ATAC-seq
1
pCHi-C
Assay category
365
DNA binding
190
Transcription
100
DNA accessibility
Target of assay
241
transcription factor
79
control
66
recombinant protein
42
histone
42
histone modification
34
RNA binding protein
34
narrow histone mark
15
chromatin remodeller
8
broad histone mark
2
other context
2
other post-translational modification
Date released
715
February, 2021
411
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
315
November, 2017
228
October, 2019
204
February, 2023
200
May, 2022
188
June, 2019
168
July, 2018
94
December, 2017
May, 2019
90
July, 2019
86
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
62
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
13
February, 2020
11
September, 2017
10
December, 2019
January, 2018
7
August, 2020
7
October, 2017
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
597
bam
528
bigWig
315
fastq
276
bed narrowPeak
249
bigBed narrowPeak
189
tsv
62
tagAlign
58
bed broadPeak
58
bigBed broadPeak
3
tar
Organism
656
Homo sapiens
Biosample type
316
cell line
193
tissue
147
primary cell
Organ
509
liver
brain
6
epithelium
6
vasculature
3
blood vessel
Project
611
AMP
45
T1D
Genome assembly (visualization)
526
hg19
424
GRCh38
Lab
611
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
month_released!
January, 2018
May, 2019
organ_slims!
brain
BIOSAMPLE
ASSAY
656 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
cell line
HepG2
315
1
tissue
liver
50
143
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
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