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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
143
total RNA-seq
93
ChIP-seq
3
DNase-seq
1
WGBS
1
pCHi-C
Assay category
143
Transcription
93
DNA binding
3
DNA accessibility
1
DNA methylation
Target of assay
61
transcription factor
27
histone
27
histone modification
27
narrow histone mark
26
control
RNA binding protein
16
recombinant protein
7
chromatin remodeller
Date released
281
November, 2017
194
May, 2020
59
December, 2017
54
August, 2017
47
November, 2018
40
May, 2022
34
August, 2021
26
December, 2018
17
January, 2019
10
July, 2019
8
January, 2021
7
October, 2019
5
December, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
February, 2020
1
January, 2018
Available data
240
bam
213
bigWig
144
tsv
69
bed narrowPeak
50
tagAlign
47
fastq
42
bigBed narrowPeak
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
241
Homo sapiens
Biosample type
200
tissue
41
cell line
Organ
228
liver
13
blood
13
bodily fluid
9
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
241
AMP
Genome assembly (visualization)
210
hg19
205
GRCh38
Lab
241
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
4
inconsistent control read length
3
inconsistent control run_type
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
241 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
WGBS
pCHi-C
tissue
liver
143
54
2
right lobe of liver
1
cell line
HepG2
26
1
1
GM12878
13
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