Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 64total RNA-seq
  • 62ChIP-seq
  • 17pCHi-C
  • 4ATAC-seq
  • 1DNAme array
Assay category
  • 64Transcription
  • 62DNA binding
  • 4DNA accessibility
  • 1DNA methylation
Target of assay
  • 51histone
  • 51histone modification
  • 30narrow histone mark
  • 21broad histone mark
  • 11transcription factor
  • 5RNA binding protein
Date released
  • 295November, 2017
  • 148May, 2021
  • 144May, 2020
  • 124October, 2019
  • 66August, 2021
  • 64November, 2018
  • 62December, 2017
  • 62June, 2019
  • 60July, 2019
  • 56August, 2017
  • 53February, 2023
  • 48March, 2020
  • 45July, 2018
  • 43February, 2021
  • 39April, 2018
  • 28December, 2018
  • 25February, 2020
  • 24November, 2019
  • 21January, 2019
  • 14May, 2019
  • 10November, 2020
  • 8October, 2018
  • 7December, 2019
  • 7October, 2017
  • 5January, 2021
  • 5March, 2019
  • 3August, 2018
  • 3October, 2022
  • 2April, 2019
  • 2May, 2022
  • 2September, 2017
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1September, 2018
Available data
  • 109bigWig
  • 105bam
  • 58tsv
  • 47bed narrowPeak
  • 46tagAlign
Organism
  • 148Homo sapiens
Biosample type
  • 92primary cell
  • 52in vitro differentiated cells
  • 3tissue
  • 1cell line
Organ
  • 3epithelium
  • 3heart
  • 2connective tissue
  • 2embryo
  • 1bone element
  • 1bone marrow
  • 1pancreas
  • 1thymus
Project
  • 87T1D
  • 61AMP
Genome assembly (visualization)
  • 109hg19
  • 105GRCh38
Lab
  • 106Kyle Gaulton, UCSD
  • 42AMP-T2D consortium
Audit category:
  • 20inconsistent ontology term
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

148 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
pCHi-C
ATAC-seq
DNAme array
primary cell
monocyte244711
naive thymus-derived CD4-positive, alpha-beta T cell21
CD4-positive, alpha-beta T cell2
neutrophil11
B cell1
in vitro differentiated cells
embryonic stem cell5114
cardiomyocytes12
induced pluripotent stem cell9
cardiac fibroblast1
cardiomyocytes (cardiac muscle cell)1
tissue
cardiac atrium1
cardiac ventricle1
thymus1
cell line
EndoC_BH11
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego