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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
48
WGBS
35
single cell RNA-seq
26
total RNA-seq
22
snATAC-seq
8
DNase-seq
6
ChIP-seq
1
FAIRE-seq
Assay category
108
DNA accessibility
61
Transcription
48
DNA methylation
6
DNA binding
Target of assay
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
381
May, 2021
341
May, 2020
303
August, 2021
303
October, 2019
273
August, 2017
255
February, 2021
200
May, 2022
197
June, 2019
191
February, 2023
166
July, 2018
162
November, 2017
115
May, 2019
90
July, 2019
74
April, 2019
73
September, 2018
62
March, 2020
59
November, 2019
59
September, 2020
52
December, 2017
47
April, 2018
47
September, 2023
43
October, 2018
39
February, 2018
35
May, 2024
23
February, 2020
23
November, 2018
22
October, 2017
19
April, 2020
16
January, 2019
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
December, 2018
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
47
bed narrowPeak
47
fastq
46
bam
36
bigWig
9
bed bed3+
9
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
7
txt
1
csv
Organism
223
Homo sapiens
Biosample type
135
primary cell
84
tissue
4
cell line
Organ
111
pancreas
80
epithelium
44
liver
6
spleen
3
blood
3
bodily fluid
2
brain
2
musculature of body
1
adipose tissue
connective tissue
Project
134
HPAP
89
AMP
Genome assembly (visualization)
48
hg19
15
GRCh38
Lab
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
25
AMP-T2D consortium
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
organ_slims!
connective tissue
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
223 results
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Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
DNase-seq
ChIP-seq
FAIRE-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
pancreatic cell
1
tissue
liver
20
20
2
islet of Langerhans
18
6
spleen
2
1
3
body of pancreas
2
2
pancreas
2
1
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cell line
GM12878
3
HepG2
1
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