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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ATAC-seq
41
WGBS
9
ChIP-seq
6
total RNA-seq
1
DNase-seq
1
Hi-C
Assay category
61
DNA accessibility
41
DNA methylation
9
DNA binding
6
Transcription
1
3D chromatin structure
Target of assay
7
histone
7
histone modification
6
control
broad histone mark
3
narrow histone mark
Date released
157
July, 2018
156
August, 2017
104
May, 2022
61
May, 2021
56
February, 2023
55
September, 2018
49
November, 2019
39
April, 2018
34
October, 2018
32
February, 2021
19
September, 2020
14
March, 2020
14
October, 2019
11
September, 2017
10
November, 2020
8
January, 2021
7
August, 2020
7
November, 2018
6
July, 2019
5
March, 2019
5
October, 2017
4
August, 2021
4
June, 2019
3
August, 2018
3
October, 2022
2
May, 2019
1
August, 2022
1
February, 2020
1
June, 2018
Available data
80
zippedFastqFolder
34
bam
24
fastq
22
bed narrowPeak
6
txt
5
bigWig
4
bigBed narrowPeak
2
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
Organism
118
Homo sapiens
Biosample type
80
primary cell
27
tissue
11
cell line
Organ
118
pancreas
103
epithelium
83
brain
44
liver
39
limb
27
kidney
26
nerve
24
blood vessel
24
vasculature
21
eye
12
artery
12
vein
5
heart
4
connective tissue
4
gonad
4
ovary
2
musculature of body
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
80
HPAP
38
AMP
Genome assembly (visualization)
23
hg19
5
GRCh38
Lab
80
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
14
AMP-T2D consortium
Audit category:
1
inconsistent assembly
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
118 results
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Clear Filters
ATAC-seq
WGBS
ChIP-seq
total RNA-seq
DNase-seq
Hi-C
primary cell
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
tissue
islet of Langerhans
21
6
cell line
Panc1
9
1
1
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