Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 77ATAC-seq
  • 41WGBS
  • 34single cell RNA-seq
  • 26total RNA-seq
  • 22snATAC-seq
Assay category
  • 99DNA accessibility
  • 60Transcription
  • 41DNA methylation
Date released
  • 715February, 2021
  • 411August, 2017
  • 406November, 2017
  • 399May, 2021
  • 341May, 2020
  • 319August, 2021
  • 314October, 2019
  • 218June, 2019
  • 205February, 2023
  • 200May, 2022
  • 168July, 2018
  • 120May, 2019
  • 108July, 2019
  • 94December, 2017
  • 88November, 2018
  • 80April, 2019
  • 76October, 2018
  • 73September, 2018
  • 64March, 2020
  • 61November, 2019
  • 59September, 2020
  • 49April, 2018
  • 47September, 2023
  • 40May, 2024
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 25February, 2020
  • 23October, 2017
  • 19April, 2020
  • 16January, 2021
  • 16November, 2020
  • 15May, 2023
  • 11September, 2017
  • 10December, 2019
  • 8January, 2018
  • 7August, 2020
  • 5March, 2019
  • 5March, 2023
  • 4August, 2018
  • 4October, 2022
  • 3June, 2018
  • 1August, 2022
Available data
  • 134zippedFastqFolder
  • 38bed narrowPeak
  • 24bam
  • 24fastq
  • 20bigWig
  • 7txt
  • 1bed bed3+
Organism
  • 200Homo sapiens
Biosample type
  • 134primary cell
  • 66tissue
Organ
  • 104pancreas
  • 80epithelium
  • 40liver
  • 2musculature of body
Project
  • 134HPAP
  • 66AMP
Genome assembly (visualization)
  • 39hg19
Lab
  • 134Klaus Kaestner, Upenn
  • 40Karen Mohlke, UNC
  • 24Kyle Gaulton, UCSD
  • 2AMP-T2D consortium
Audit category:
  • 1audit script error
BIOSAMPLE
ASSAY

200 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
primary cell
Langerhans cell3321
pancreatic alpha cell2225
pancreatic beta cell1316
pancreatic acinar cell4
tissue
liver2020
islet of Langerhans186
skeletal muscle tissue11
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego