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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
95
DNA binding
10
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
57
transcription factor
35
histone
35
histone modification
24
RNA binding protein
20
broad histone mark
16
recombinant protein
15
narrow histone mark
5
chromatin remodeller
3
control
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
76
October, 2018
73
November, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
February, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
November, 2020
15
May, 2023
12
January, 2019
11
September, 2017
10
December, 2019
8
December, 2018
8
January, 2021
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
108
bigWig
101
bed narrowPeak
73
fastq
72
bam
61
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
113
Homo sapiens
Biosample type
66
tissue
46
cell line
1
primary cell
Organ
53
liver
40
heart
15
blood
bodily fluid
9
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
113
AMP
Genome assembly (visualization)
107
GRCh38
59
hg19
Lab
73
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
month_released!
August, 2018
February, 2018
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
113 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
tissue
left cardiac atrium
40
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
+ See 3 more…
cell line
HepG2
45
1
primary cell
pancreatic cell
1
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