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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
317
ChIP-seq
8
ATAC-seq
Assay category
317
DNA binding
8
DNA accessibility
Target of assay
242
transcription factor
98
histone
histone modification
72
control
66
recombinant protein
60
broad histone mark
38
narrow histone mark
35
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
683
February, 2021
314
May, 2020
314
November, 2017
296
August, 2021
235
May, 2021
197
August, 2017
181
June, 2019
153
February, 2023
135
July, 2018
120
May, 2022
104
October, 2019
95
July, 2019
88
November, 2018
58
December, 2017
56
March, 2020
47
September, 2023
45
November, 2019
44
October, 2018
40
September, 2020
35
December, 2018
26
May, 2019
25
February, 2020
23
February, 2018
23
January, 2019
20
April, 2019
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
11
October, 2017
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
5
May, 2024
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
1
September, 2018
Available data
322
bam
312
fastq
263
bigWig
243
bed narrowPeak
237
bigBed narrowPeak
46
bed broadPeak
45
bigBed broadPeak
13
tagAlign
3
tar
Organism
325
Homo sapiens
Biosample type
300
cell line
23
tissue
2
primary cell
Organ
300
liver
22
brain
5
pancreas
epithelium
4
vasculature
2
blood vessel
1
adipose tissue
1
connective tissue
1
spleen
Project
325
AMP
Genome assembly (visualization)
260
hg19
213
GRCh38
Lab
324
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
9
missing controlled_by
Audit category:
10
inconsistent control read length
4
inconsistent control run_type
organ_slims!
epithelium
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
325 results
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Clear Filters
ChIP-seq
ATAC-seq
cell line
HepG2
300
tissue
body of pancreas
4
brain
3
layer of hippocampus
3
caudate nucleus
2
cerebellum (Hemisphere)
1
1
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primary cell
astrocyte of the cerebellum
2
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