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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
457
ChIP-seq
2
total RNA-seq
Assay category
457
DNA binding
2
Transcription
Target of assay
254
transcription factor
118
histone
118
histone modification
82
control
69
broad histone mark
66
recombinant protein
49
narrow histone mark
43
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
406
November, 2017
399
May, 2021
354
August, 2017
341
May, 2020
February, 2021
318
August, 2021
313
October, 2019
217
June, 2019
204
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
96
July, 2019
94
December, 2017
87
November, 2018
April, 2019
73
September, 2018
63
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
445
bam
376
bigWig
361
fastq
353
bed narrowPeak
352
bigBed narrowPeak
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
3
tar
2
tsv
Organism
459
Homo sapiens
Biosample type
315
cell line
133
tissue
11
primary cell
Organ
315
liver
91
brain
53
pancreas
adipose tissue
23
connective tissue
8
epithelium
6
vasculature
3
blood vessel
Project
459
AMP
Genome assembly (visualization)
323
hg19
322
GRCh38
Lab
459
AMP-T2D consortium
Audit category:
10
missing controlled_by
Audit category:
22
inconsistent control read length
4
inconsistent control run_type
month_released!
April, 2019
February, 2021
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
459 results
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Clear Filters
ChIP-seq
total RNA-seq
cell line
HepG2
315
tissue
body of pancreas
33
layer of hippocampus
22
endocrine pancreas
16
caudate nucleus
15
substantia nigra
15
+ See 4 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
pancreatic acinar cell
2
See all biosamples
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