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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
318
ChIP-seq
26
total RNA-seq
14
ATAC-seq
1
single cell RNA-seq
Assay category
318
DNA binding
27
Transcription
14
DNA accessibility
Target of assay
244
transcription factor
histone
120
histone modification
71
control
67
broad histone mark
66
recombinant protein
53
narrow histone mark
37
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
709
February, 2021
318
November, 2017
May, 2020
299
August, 2021
259
May, 2021
213
August, 2017
205
February, 2023
200
May, 2022
168
July, 2018
167
June, 2019
103
July, 2019
92
October, 2019
88
November, 2018
63
December, 2017
61
March, 2020
59
September, 2020
51
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
41
September, 2018
35
December, 2018
27
May, 2019
23
February, 2018
23
January, 2019
22
February, 2020
20
April, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
May, 2024
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
357
bam
347
fastq
299
bigWig
253
bed narrowPeak
253
bigBed narrowPeak
47
bed broadPeak
47
bigBed broadPeak
26
tsv
11
tagAlign
3
tar
1
csv
Organism
359
Homo sapiens
Biosample type
300
cell line
47
primary cell
12
tissue
Organ
300
liver
44
epithelium
40
pancreas
18
brain
4
vasculature
2
blood vessel
Project
359
AMP
Genome assembly (visualization)
297
hg19
247
GRCh38
Lab
359
AMP-T2D consortium
Audit category:
9
missing controlled_by
Audit category:
10
inconsistent control read length
4
inconsistent control run_type
month_released!
May, 2020
organ_slims!
limb
target.investigated_as!
histone
BIOSAMPLE
ASSAY
359 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
cell line
HepG2
300
primary cell
pancreatic beta cell
10
4
pancreatic alpha cell
10
3
pancreatic ductal cell
4
4
pancreatic acinar cell
2
3
astrocyte of the cerebellum
2
+ See 3 more…
tissue
layer of hippocampus
3
caudate nucleus
2
cingulate gyrus
2
middle frontal area 46
2
substantia nigra
2
+ See 1 more…
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