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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
438
ChIP-seq
48
single cell RNA-seq
26
total RNA-seq
14
ATAC-seq
Assay category
438
DNA binding
74
Transcription
14
DNA accessibility
Target of assay
244
transcription factor
120
histone
120
histone modification
71
control
67
broad histone mark
66
recombinant protein
53
narrow histone mark
37
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
464
bam
406
bigWig
397
fastq
359
bed narrowPeak
326
bigBed narrowPeak
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
26
tsv
3
tar
1
csv
Organism
526
Homo sapiens
Biosample type
315
cell line
129
tissue
82
primary cell
Organ
315
liver
91
brain
72
pancreas
67
epithelium
47
kidney
6
vasculature
3
blood vessel
Project
479
AMP
47
KPMP
Genome assembly (visualization)
353
hg19
352
GRCh38
Lab
479
AMP-T2D consortium
47
KPMP
Audit category:
42
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
month_released!
May, 2023
BIOSAMPLE
ASSAY
526 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
cell line
HepG2
315
tissue
kidney
47
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
+ See 2 more…
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 4 more…
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