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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
9
DNase-seq
8
ATAC-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
21
DNA binding
18
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
transcription factor
21
RNA binding protein
16
recombinant protein
12
histone
12
histone modification
10
broad histone mark
9
control
7
chromatin remodeller
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
710
February, 2021
383
May, 2021
364
August, 2017
341
May, 2020
308
August, 2021
307
October, 2019
214
June, 2019
205
February, 2023
May, 2022
168
July, 2018
162
November, 2017
115
May, 2019
108
July, 2019
74
April, 2019
73
September, 2018
64
March, 2020
61
October, 2018
60
November, 2019
59
September, 2020
52
December, 2017
49
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
25
February, 2020
24
November, 2018
23
October, 2017
19
April, 2020
16
January, 2019
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
7
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
41
fastq
38
bam
31
bigWig
22
bed narrowPeak
16
bigBed narrowPeak
14
tagAlign
13
bed broadPeak
9
bed bed3+
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
47
Homo sapiens
Biosample type
42
tissue
4
cell line
1
primary cell
Organ
18
brain
12
pancreas
7
spleen
4
liver
3
blood
3
bodily fluid
2
adipose tissue
2
connective tissue
Project
47
AMP
Genome assembly (visualization)
30
GRCh38
23
hg19
Lab
46
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
4
missing controlled_by
month_released!
May, 2022
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
47 results
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ChIP-seq
DNase-seq
ATAC-seq
WGBS
FAIRE-seq
single cell RNA-seq
tissue
brain
15
2
body of pancreas
2
4
2
spleen
3
1
1
2
pancreas
2
1
liver
2
+ See 4 more…
cell line
GM12878
3
HepG2
1
primary cell
pancreatic cell
1
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