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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
ChIP-seq
9
DNase-seq
7
WGBS
3
Hi-C
1
FAIRE-seq
1
MPRA
1
single cell RNA-seq
Assay category
54
DNA binding
10
DNA accessibility
7
DNA methylation
3
3D chromatin structure
1
Transcription
Target of assay
64
transcription factor
21
RNA binding protein
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
399
May, 2021
341
May, 2020
340
November, 2017
319
August, 2021
307
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
76
October, 2018
73
September, 2018
72
November, 2018
64
March, 2020
November, 2019
59
September, 2020
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
72
fastq
71
bam
65
bigWig
58
bed narrowPeak
58
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
cool
3
hic
1
csv
1
txt
Organism
75
Homo sapiens
Biosample type
46
cell line
26
tissue
4
primary cell
Organ
37
liver
15
blood
15
bodily fluid
10
pancreas
9
spleen
3
epithelium
2
brain
1
adipose tissue
1
connective tissue
Project
73
AMP
3
HPAP
Genome assembly (visualization)
64
GRCh38
61
hg19
Lab
73
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
Audit category:
2
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
month_released!
April, 2018
November, 2019
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
76 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
Hi-C
FAIRE-seq
MPRA
single cell RNA-seq
cell line
HepG2
29
1
GM12878
15
MIN6
1
tissue
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
+ See 2 more…
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic cell
1
See all biosamples
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