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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ATAC-seq
28
ChIP-seq
20
total RNA-seq
2
Hi-C
Assay category
32
DNA accessibility
28
DNA binding
20
Transcription
2
3D chromatin structure
Target of assay
22
histone
22
histone modification
16
broad histone mark
6
narrow histone mark
5
control
1
RNA binding protein
1
transcription factor
Date released
406
November, 2017
397
May, 2021
341
May, 2020
314
August, 2021
308
October, 2019
286
August, 2017
260
February, 2021
200
June, 2019
200
May, 2022
191
February, 2023
166
July, 2018
120
May, 2019
94
December, 2017
90
July, 2019
87
November, 2018
80
April, 2019
73
September, 2018
62
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
72
bam
47
bed narrowPeak
44
bigWig
20
tsv
16
fastq
14
tagAlign
6
bigBed narrowPeak
4
bed broadPeak
2
bedpe bed3+
2
hic
Organism
82
Homo sapiens
Biosample type
61
tissue
16
cell line
5
in vitro differentiated cells
Organ
60
pancreas
16
brain
16
epithelium
2
adipose tissue
connective tissue
1
spleen
Project
82
AMP
Genome assembly (visualization)
70
hg19
69
GRCh38
Lab
81
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
21
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
March, 2019
organ_slims!
connective tissue
pituitary gland
BIOSAMPLE
ASSAY
82 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
Hi-C
tissue
islet of Langerhans
20
19
1
brain
15
body of pancreas
4
cerebellum (Hemisphere)
1
spleen
1
cell line
EndoC_BH1
1
13
1
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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