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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ATAC-seq
19
total RNA-seq
15
ChIP-seq
1
Hi-C
Assay category
33
DNA accessibility
19
Transcription
15
DNA binding
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
10
broad histone mark
3
control
2
narrow histone mark
Date released
617
February, 2021
400
November, 2017
382
August, 2017
373
May, 2021
341
May, 2020
307
August, 2021
253
October, 2019
195
June, 2019
135
July, 2018
120
May, 2022
118
February, 2023
88
November, 2018
87
July, 2019
80
April, 2019
75
December, 2017
74
October, 2018
65
May, 2019
55
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
59
bam
37
bed narrowPeak
33
bigWig
19
tsv
17
fastq
14
tagAlign
6
bigBed narrowPeak
4
bed broadPeak
1
bedpe bed3+
1
hic
Organism
68
Homo sapiens
Biosample type
63
tissue
5
in vitro differentiated cells
Organ
60
pancreas
16
brain
epithelium
2
adipose tissue
2
connective tissue
1
spleen
Project
68
AMP
Genome assembly (visualization)
58
GRCh38
58
hg19
Lab
67
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
6
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
blood vessel
epithelium
BIOSAMPLE
ASSAY
68 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
Hi-C
tissue
islet of Langerhans
20
19
1
brain
15
body of pancreas
4
adipose tissue(adipose white tissue)
1
cerebellum (Hemisphere)
1
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in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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