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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
38
total RNA-seq
23
ATAC-seq
2
Hi-C
Assay category
64
DNA binding
38
Transcription
23
DNA accessibility
2
3D chromatin structure
Target of assay
40
histone
40
histone modification
25
broad histone mark
15
narrow histone mark
13
control
11
transcription factor
7
RNA binding protein
Date released
188
August, 2017
157
July, 2018
104
May, 2022
72
September, 2018
61
May, 2021
56
February, 2023
55
November, 2019
53
October, 2018
39
April, 2018
32
February, 2021
19
September, 2020
18
October, 2019
14
March, 2020
11
September, 2017
10
November, 2020
8
January, 2021
7
August, 2020
7
November, 2018
6
July, 2019
5
March, 2019
5
October, 2017
4
August, 2021
4
June, 2019
3
August, 2018
3
October, 2022
2
May, 2019
1
August, 2022
1
February, 2020
1
June, 2018
Available data
106
bam
76
bigWig
71
bed narrowPeak
56
fastq
40
bigBed narrowPeak
22
tsv
2
bedpe bed3+
2
hic
Organism
127
Homo sapiens
Biosample type
90
tissue
21
primary cell
16
cell line
Organ
127
pancreas
37
epithelium
24
adipose tissue
24
connective tissue
Project
108
AMP
19
HPAP
Genome assembly (visualization)
96
GRCh38
95
hg19
Lab
108
AMP-T2D consortium
19
Klaus Kaestner, Upenn
Audit category:
16
inconsistent ontology term
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
127 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
tissue
islet of Langerhans
19
19
1
body of pancreas
33
endocrine pancreas
16
pancreas
2
primary cell
pancreatic alpha cell
15
2
pancreatic acinar cell
2
pancreatic beta cell
1
1
cell line
EndoC_BH1
13
1
1
1
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