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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ATAC-seq
20
total RNA-seq
19
ChIP-seq
2
Hi-C
Assay category
31
DNA accessibility
20
Transcription
19
DNA binding
2
3D chromatin structure
Target of assay
10
histone
10
histone modification
8
control
6
broad histone mark
4
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
70
bam
42
bed narrowPeak
36
bigWig
20
tsv
11
fastq
5
bigBed narrowPeak
2
bed bed3+
2
bedpe bed3+
2
hic
Organism
72
Homo sapiens
Biosample type
46
tissue
16
cell line
5
in vitro differentiated cells
5
primary cell
Organ
66
pancreas
21
epithelium
1
adipose tissue
1
connective tissue
Project
72
AMP
Genome assembly (visualization)
66
hg19
64
GRCh38
Lab
72
AMP-T2D consortium
Audit category:
22
inconsistent ontology term
month_released!
August, 2018
February, 2021
BIOSAMPLE
ASSAY
72 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
Hi-C
tissue
islet of Langerhans
19
19
6
1
adipose tissue(adipose white tissue)
1
cell line
EndoC_BH1
1
1
13
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
pancreatic acinar cell
1
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