Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 20total RNA-seq
  • 13ChIP-seq
  • 3ATAC-seq
  • 2Hi-C
Assay category
  • 20Transcription
  • 13DNA binding
  • 3DNA accessibility
  • 23D chromatin structure
Target of assay
  • 10histone
  • 10histone modification
  • 6broad histone mark
  • 4narrow histone mark
  • 2control
  • 1RNA binding protein
  • 1transcription factor
Date released
  • 683February, 2021
  • 388August, 2017
  • 385May, 2021
  • 301August, 2021
  • 285May, 2020
  • 240October, 2019
  • 200May, 2022
  • 199February, 2023
  • 186June, 2019
  • 167July, 2018
  • 111November, 2017
  • 106May, 2019
  • 84July, 2019
  • 79April, 2019
  • 73September, 2018
  • 69October, 2018
  • 59September, 2020
  • 49April, 2018
  • 48March, 2020
  • 47September, 2023
  • 40May, 2024
  • 39February, 2018
  • 38November, 2019
  • 35December, 2017
  • 26November, 2018
  • 25February, 2020
  • 23October, 2017
  • 19April, 2020
  • 15May, 2023
  • 13January, 2021
  • 11September, 2017
  • 10November, 2020
  • 9January, 2019
  • 8January, 2018
  • 7August, 2020
  • 7December, 2018
  • 5March, 2019
  • 5March, 2023
  • 4August, 2018
  • 4October, 2022
  • 3December, 2019
  • 3June, 2018
  • 1August, 2022
Available data
  • 36bam
  • 31bigWig
  • 20tsv
  • 14bed narrowPeak
  • 2bedpe bed3+
  • 2hic
Organism
  • 38Homo sapiens
Biosample type
  • 21tissue
  • 16cell line
  • 1in vitro differentiated cells
Organ
  • 36pancreas
  • 16epithelium
  • 1adipose tissue
  • 1connective tissue
Project
  • 38AMP
Genome assembly (visualization)
  • 36hg19
  • 34GRCh38
Lab
  • 38AMP-T2D consortium
Audit category:
  • 18inconsistent ontology term
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

38 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
tissue
islet of Langerhans191
adipose tissue(adipose white tissue)1
cell line
EndoC_BH111311
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego