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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
10
MeRIP-seq
6
total RNA-seq
3
Hi-C
1
ATAC-seq
1
DNase-seq
1
MPRA
Assay category
74
DNA binding
6
Transcription
3
3D chromatin structure
2
DNA accessibility
Target of assay
34
control
30
histone
30
histone modification
19
broad histone mark
15
transcription factor
11
RNA binding protein
11
narrow histone mark
5
nucleotide modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
82
bam
60
fastq
52
bigWig
47
bed narrowPeak
46
bigBed narrowPeak
6
tsv
3
bedpe bed3+
3
cool
3
hic
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
txt
Organism
95
Homo sapiens
Biosample type
78
tissue
11
primary cell
7
cell line
Organ
66
pancreas
29
connective tissue
23
adipose tissue
11
epithelium
Project
93
AMP
3
HPAP
Genome assembly (visualization)
56
hg19
53
GRCh38
Lab
83
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
3
Klaus Kaestner, Upenn
Audit category:
6
inconsistent ontology term
3
audit script error
Audit category:
1
inconsistent control read length
month_released!
July, 2018
October, 2019
BIOSAMPLE
ASSAY
96 results
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Clear Filters
ChIP-seq
MeRIP-seq
total RNA-seq
Hi-C
ATAC-seq
DNase-seq
MPRA
tissue
body of pancreas
33
endocrine pancreas
16
subcutaneous adipose tissue
12
omental fat pad
11
islet of Langerhans
4
+ See 1 more…
primary cell
osteoblast
4
1
1
pancreatic acinar cell
2
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
6
MIN6
1
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