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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
total RNA-seq
15
ATAC-seq
10
MeRIP-seq
1
DNase-seq
1
single cell RNA-seq
Assay category
31
Transcription
16
DNA accessibility
Target of assay
32
histone
histone modification
17
broad histone mark
15
narrow histone mark
5
control
5
nucleotide modification
Date released
715
February, 2021
318
November, 2017
314
May, 2020
299
August, 2021
259
May, 2021
212
August, 2017
205
February, 2023
200
May, 2022
181
June, 2019
168
July, 2018
118
October, 2019
108
July, 2019
88
November, 2018
63
December, 2017
61
March, 2020
59
September, 2020
51
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
41
September, 2018
35
December, 2018
28
May, 2019
25
February, 2020
23
February, 2018
23
January, 2019
20
April, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
May, 2024
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
46
bam
45
bigWig
41
fastq
30
tsv
16
bed narrowPeak
15
bigBed narrowPeak
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
csv
Organism
57
Homo sapiens
Biosample type
47
primary cell
6
cell line
4
tissue
Organ
50
pancreas
46
epithelium
6
connective tissue
Project
57
AMP
Genome assembly (visualization)
46
GRCh38
46
hg19
Lab
47
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
organ_slims!
ureter
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
57 results
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total RNA-seq
ATAC-seq
MeRIP-seq
DNase-seq
single cell RNA-seq
primary cell
pancreatic beta cell
10
4
pancreatic alpha cell
10
3
pancreatic ductal cell
4
4
osteoblast
4
1
1
pancreatic acinar cell
2
3
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cell line
EndoC_BH1
6
tissue
islet of Langerhans
4
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