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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
124
ChIP-seq
4
DNase-seq
2
ATAC-seq
1
FAIRE-seq
1
Hi-C
1
total RNA-seq
Assay category
124
DNA binding
7
DNA accessibility
1
3D chromatin structure
1
Transcription
Target of assay
110
histone
110
histone modification
84
narrow histone mark
26
broad histone mark
14
control
Date released
133
October, 2019
91
November, 2017
78
May, 2019
66
February, 2021
36
February, 2023
34
June, 2019
27
July, 2019
16
October, 2017
15
February, 2020
6
August, 2021
6
March, 2020
2
November, 2018
Available data
129
bam
112
bigWig
109
bed narrowPeak
38
tagAlign
33
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
4
bed bed3+
1
hic
1
tagAlign bed3+
1
tar
1
tsv
Organism
133
Homo sapiens
Biosample type
112
tissue
21
primary cell
Organ
86
brain
69
limb
47
blood vessel
47
vasculature
42
nerve
35
epithelium
30
kidney
26
artery
21
eye
21
vein
18
pancreas
8
heart
liver
4
connective tissue
4
gonad
4
ovary
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
133
AMP
Genome assembly (visualization)
115
hg19
111
GRCh38
Lab
133
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
month_released!
November, 2020
organ_slims!
liver
BIOSAMPLE
ASSAY
133 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
Hi-C
total RNA-seq
tissue
tibial artery
23
2
1
brain
5
1
superior frontal gyrus
4
central medial thalamic nucleus
3
angular gyrus
2
+ See 61 more…
primary cell
endothelial cell of umbilical vein
17
2
1
1
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