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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
FAIRE-seq
1
Hi-C
1
total RNA-seq
Assay category
101
DNA binding
4
DNA accessibility
1
3D chromatin structure
1
Transcription
Target of assay
92
histone
92
histone modification
80
narrow histone mark
12
broad histone mark
9
control
Date released
107
October, 2019
91
November, 2017
30
June, 2019
28
May, 2019
18
July, 2019
16
October, 2017
12
February, 2020
3
March, 2020
2
November, 2018
1
February, 2023
Available data
103
bam
91
bigWig
88
bed narrowPeak
38
tagAlign
13
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
1
hic
1
tagAlign bed3+
1
tar
1
tsv
Organism
107
Homo sapiens
Biosample type
86
tissue
21
primary cell
Organ
86
brain
69
limb
47
blood vessel
47
vasculature
42
nerve
35
epithelium
30
kidney
26
artery
21
eye
21
vein
18
pancreas
8
heart
7
liver
4
connective tissue
4
gonad
4
ovary
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
107
AMP
Genome assembly (visualization)
94
hg19
90
GRCh38
Lab
107
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
organ_slims!
adrenal gland
esophagus
BIOSAMPLE
ASSAY
107 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
Hi-C
total RNA-seq
tissue
brain
5
1
superior frontal gyrus
4
central medial thalamic nucleus
3
angular gyrus
2
anterior cingulate gyrus
2
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primary cell
endothelial cell of umbilical vein
17
2
1
1
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