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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
14
total RNA-seq
4
pCHi-C
2
DNase-seq
1
ATAC-seq
1
FAIRE-seq
1
Hi-C
Assay category
19
DNA binding
14
Transcription
4
DNA accessibility
1
3D chromatin structure
Target of assay
17
histone
17
histone modification
9
broad histone mark
8
narrow histone mark
2
control
Date released
42
October, 2019
31
February, 2023
7
June, 2019
1
February, 2020
1
July, 2019
1
March, 2020
Available data
20
bam
15
bigWig
13
bed narrowPeak
13
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
1
hic
1
tar
Organism
42
Homo sapiens
Biosample type
21
primary cell
21
tissue
Organ
86
brain
69
limb
47
blood vessel
47
vasculature
42
nerve
35
epithelium
30
kidney
26
artery
21
eye
21
vein
pancreas
8
heart
7
liver
4
connective tissue
4
gonad
4
ovary
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
42
AMP
Genome assembly (visualization)
16
hg19
12
GRCh38
Lab
42
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
pancreas
BIOSAMPLE
ASSAY
42 results
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Clear Filters
ChIP-seq
total RNA-seq
pCHi-C
DNase-seq
ATAC-seq
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
17
2
1
1
tissue
islet of Langerhans
2
14
4
1
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