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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
6
DNase-seq
4
total RNA-seq
2
ATAC-seq
1
FAIRE-seq
1
Hi-C
Assay category
18
DNA binding
9
DNA accessibility
4
Transcription
1
3D chromatin structure
Target of assay
57
histone
histone modification
39
broad histone mark
18
control
18
narrow histone mark
Date released
66
February, 2021
35
February, 2023
32
October, 2019
14
May, 2019
12
July, 2019
7
June, 2019
6
August, 2021
4
February, 2020
4
March, 2020
4
November, 2017
Available data
31
bam
13
bigWig
9
bed narrowPeak
7
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
4
tsv
1
hic
1
tar
Organism
32
Homo sapiens
Biosample type
26
tissue
6
primary cell
Organ
26
limb
22
kidney
19
eye
18
nerve
14
blood vessel
14
epithelium
14
vasculature
11
pancreas
9
brain
8
artery
6
vein
3
connective tissue
3
heart
2
liver
1
adipose tissue
1
pituitary gland
1
skin of body
Project
32
AMP
Genome assembly (visualization)
14
hg19
12
GRCh38
Lab
32
AMP-T2D consortium
Audit category:
1
audit script error
target.investigated_as!
histone modification
other post-translational modification
BIOSAMPLE
ASSAY
32 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
FAIRE-seq
Hi-C
tissue
tibial nerve
11
2
4
1
tibial artery
5
2
1
primary cell
endothelial cell of umbilical vein
2
2
1
1
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