Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 201ChIP-seq
  • 27total RNA-seq
  • 19ATAC-seq
  • 8DNase-seq
  • 4Hi-C
  • 4pCHi-C
  • 1FAIRE-seq
Assay category
  • 201DNA binding
  • 28DNA accessibility
  • 27Transcription
  • 43D chromatin structure
Target of assay
  • 155histone
  • 155histone modification
  • 100narrow histone mark
  • 55broad histone mark
  • 39control
  • 7recombinant protein
  • 7transcription factor
Date released
  • 704February, 2021
  • 406November, 2017
  • 378August, 2017
  • 271August, 2021
  • 265May, 2021
  • 264October, 2019
  • 253May, 2020
  • 198May, 2022
  • 188June, 2019
  • 158February, 2023
  • 124July, 2018
  • 120May, 2019
  • 91December, 2017
  • 86November, 2018
  • 79April, 2019
  • 75October, 2018
  • 72July, 2019
  • 72September, 2018
  • 60November, 2019
  • 59September, 2020
  • 47September, 2023
  • 40May, 2024
  • 38February, 2018
  • 35December, 2018
  • 32March, 2020
  • 30January, 2019
  • 19April, 2020
  • 16October, 2017
  • 15May, 2023
  • 14January, 2021
  • 12November, 2020
  • 10April, 2018
  • 10December, 2019
  • 9September, 2017
  • 8January, 2018
  • 7August, 2020
  • 4March, 2023
  • 2June, 2018
  • 1August, 2018
  • 1August, 2022
  • 1October, 2022
Available data
  • 207bam
  • 161bigWig
  • 149bed narrowPeak
  • 67bigBed narrowPeak
  • 13tsv
  • 9bed broadPeak
  • 9bigBed broadPeak
  • 9tagAlign
  • 8bed bed3+
  • 3hic
  • 2bedpe bed3+
  • 1hdf5
  • 1tar
Organism
  • 264Homo sapiens
Biosample type
  • 198tissue
  • 30cell line
  • 30primary cell
  • 6in vitro differentiated cells
Organ
  • 69limb
  • 54brain
  • 47blood vessel
  • 47vasculature
  • 42nerve
  • 31epithelium
  • 26artery
  • 26kidney
  • 21eye
  • 21vein
  • 18pancreas
  • 7liver
  • 6heart
  • 4gonad
  • 4ovary
  • 1connective tissue
  • 1lymph node
  • 1pituitary gland
  • 1skin of body
Project
  • 264AMP
Genome assembly (visualization)
  • 169hg19
  • 163GRCh38
Lab
  • 264AMP-T2D consortium
Audit category:
  • 23inconsistent ontology term
  • 1audit script error
Audit category:
  • 1inconsistent assembly
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

264 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
FAIRE-seq
tissue
islet of Langerhans2114134
tibial nerve35412
tibial artery2312
brain51
heart51
cell line
Panc11311
RCC 7860 HIF1a re-expression41
RCC 7860 HIF2a over-expression31
RCC 7860 vector31
glomerular visceral epithelial cell11
primary cell
endothelial cell of umbilical vein17211
epithelial cell of proximal tubule7
Heart fetal (cardiac muscle cell)1
Liver fetal (hepatocyte)1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)111
cardiomyocytes (cardiac muscle cell)111
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego