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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 97ChIP-seq
  • 12total RNA-seq
  • 5ATAC-seq
  • 5DNase-seq
  • 4Hi-C
  • 1FAIRE-seq
Assay category
  • 97DNA binding
  • 12Transcription
  • 11DNA accessibility
  • 43D chromatin structure
Target of assay
  • 81histone
  • 81histone modification
  • 58narrow histone mark
  • 23broad histone mark
  • 9control
  • 7recombinant protein
  • 7transcription factor
Date released
  • 295November, 2017
  • 148May, 2021
  • 144May, 2020
  • 124October, 2019
  • 66August, 2021
  • 64November, 2018
  • 62December, 2017
  • 62June, 2019
  • 60July, 2019
  • 56August, 2017
  • 53February, 2023
  • 48March, 2020
  • 45July, 2018
  • 43February, 2021
  • 39April, 2018
  • 28December, 2018
  • 25February, 2020
  • 24November, 2019
  • 21January, 2019
  • 14May, 2019
  • 10November, 2020
  • 8October, 2018
  • 7December, 2019
  • 7October, 2017
  • 5January, 2021
  • 5March, 2019
  • 3August, 2018
  • 3October, 2022
  • 2April, 2019
  • 2May, 2022
  • 2September, 2017
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1September, 2018
Available data
  • 114bam
  • 103bigWig
  • 87bed narrowPeak
  • 40tagAlign
  • 26bigBed narrowPeak
  • 12tsv
  • 4bed broadPeak
  • 4bigBed broadPeak
  • 3bed bed3+
  • 3bedpe bed3+
  • 3hic
  • 1hdf5
  • 1tagAlign bed3+
  • 1tar
Organism
  • 124Homo sapiens
Biosample type
  • 66tissue
  • 28cell line
  • 22primary cell
  • 8in vitro differentiated cells
Organ
  • 38brain
  • 24epithelium
  • 22blood vessel
  • 22vasculature
  • 19kidney
  • 18vein
  • 13pancreas
  • 8heart
  • 6liver
  • 4artery
  • 4limb
  • 3connective tissue
  • 1adipose tissue
  • 1pituitary gland
Project
  • 124AMP
Genome assembly (visualization)
  • 109hg19
  • 100GRCh38
Lab
  • 124AMP-T2D consortium
Audit category:
  • 19inconsistent ontology term
Audit category:
  • 1inconsistent assembly
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

124 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
tissue
heart521
brain51
liver51
tibial artery4
angular gyrus2
cell line
Panc11111
RCC 7860 HIF1a re-expression41
RCC 7860 HIF2a over-expression31
RCC 7860 vector31
glomerular visceral epithelial cell11
primary cell
endothelial cell of umbilical vein1611
kidney glomerular epithelial cell11
kidney tubule cell11
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)111
cardiomyocytes (cardiac muscle cell)111
adipocyte2
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