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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 56ChIP-seq
  • 9total RNA-seq
  • 3DNase-seq
  • 3Hi-C
  • 2ATAC-seq
  • 1FAIRE-seq
Assay category
  • 56DNA binding
  • 9Transcription
  • 6DNA accessibility
  • 33D chromatin structure
Target of assay
  • 40histone
  • 40histone modification
  • 23broad histone mark
  • 17narrow histone mark
  • 9control
  • 7recombinant protein
  • 7transcription factor
Date released
  • 295November, 2017
  • 74October, 2019
  • 62November, 2018
  • 59December, 2017
  • 56May, 2020
  • 32February, 2021
  • 32June, 2019
  • 28December, 2018
  • 24July, 2019
  • 23August, 2017
  • 23November, 2019
  • 21January, 2019
  • 18August, 2021
  • 16March, 2020
  • 14May, 2019
  • 14May, 2021
  • 7December, 2019
  • 7October, 2018
  • 6February, 2023
  • 6November, 2020
  • 3January, 2021
  • 1April, 2019
  • 1July, 2018
Available data
  • 71bam
  • 57bigWig
  • 47bed narrowPeak
  • 23bigBed narrowPeak
  • 9tsv
  • 4bed broadPeak
  • 4bigBed broadPeak
  • 3bed bed3+
  • 2bedpe bed3+
  • 2hic
  • 1hdf5
  • 1tar
Organism
  • 74Homo sapiens
Biosample type
  • 28cell line
  • 22tissue
  • 18primary cell
  • 6in vitro differentiated cells
Organ
  • 22blood vessel
  • 22vasculature
  • 20epithelium
  • 18vein
  • 15kidney
  • 13pancreas
  • 6brain
  • 6heart
  • 6liver
  • 4artery
  • 4limb
Project
  • 74AMP
Genome assembly (visualization)
  • 61hg19
  • 56GRCh38
Lab
  • 74AMP-T2D consortium
Audit category:
  • 19inconsistent ontology term
Audit category:
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

74 results

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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
Hi-C
ATAC-seq
FAIRE-seq
cell line
Panc11111
RCC 7860 HIF1a re-expression41
RCC 7860 HIF2a over-expression31
RCC 7860 vector31
glomerular visceral epithelial cell11
tissue
brain51
heart51
liver51
tibial artery4
primary cell
endothelial cell of umbilical vein1611
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)111
cardiomyocytes (cardiac muscle cell)111
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