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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 187ChIP-seq
  • 30total RNA-seq
  • 22ATAC-seq
  • 10DNase-seq
  • 5Hi-C
  • 4pCHi-C
  • 1FAIRE-seq
Assay category
  • 187DNA binding
  • 33DNA accessibility
  • 30Transcription
  • 53D chromatin structure
Target of assay
  • 196histone
  • 196histone modification
  • 141narrow histone mark
  • broad histone mark
  • 39control
  • 7recombinant protein
  • 7transcription factor
Date released
  • 715February, 2021
  • 356November, 2017
  • 341May, 2020
  • 323May, 2021
  • 310August, 2021
  • 302August, 2017
  • 259October, 2019
  • 210June, 2019
  • 205February, 2023
  • 200May, 2022
  • 168July, 2018
  • 108July, 2019
  • 88November, 2018
  • 79December, 2017
  • 64March, 2020
  • 62May, 2019
  • 59September, 2020
  • 57October, 2018
  • 56September, 2018
  • 55November, 2019
  • 49April, 2018
  • 47September, 2023
  • 43April, 2019
  • 35December, 2018
  • 31February, 2018
  • 26January, 2019
  • 25February, 2020
  • 20May, 2024
  • 19April, 2020
  • 16January, 2021
  • 16November, 2020
  • 15May, 2023
  • 13October, 2017
  • 11September, 2017
  • 10December, 2019
  • 8January, 2018
  • 7August, 2020
  • 5March, 2019
  • 5March, 2023
  • 4August, 2018
  • 4October, 2022
  • 3June, 2018
  • 1August, 2022
Available data
  • 195bam
  • 155bigWig
  • 139bed narrowPeak
  • 49tagAlign
  • 32bigBed narrowPeak
  • 16tsv
  • 8bed bed3+
  • 7bed broadPeak
  • 7bigBed broadPeak
  • 4hic
  • 3bedpe bed3+
  • 1hdf5
  • 1tagAlign bed3+
  • 1tar
Organism
  • 259Homo sapiens
Biosample type
  • 203tissue
  • 26cell line
  • 22primary cell
  • 8in vitro differentiated cells
Organ
  • 83brain
  • 39limb
  • 27kidney
  • 26nerve
  • 24blood vessel
  • 24vasculature
  • 23epithelium
  • 21eye
  • 14pancreas
  • 12artery
  • 12vein
  • 5heart
  • 4connective tissue
  • 4gonad
  • 4liver
  • 4ovary
  • 2pituitary gland
  • 1adipose tissue
  • 1lymph node
  • 1skin of body
Project
  • 259AMP
Genome assembly (visualization)
  • 165hg19
  • 157GRCh38
Lab
  • 259AMP-T2D consortium
Audit category:
  • 23inconsistent ontology term
  • 1audit script error
Audit category:
  • 1inconsistent assembly
target.investigated_as!
  • broad histone mark
BIOSAMPLE
ASSAY

259 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
FAIRE-seq
tissue
islet of Langerhans2114134
tibial nerve19412
tibial artery912
heart221
kidney4
cell line
Panc1911
RCC 7860 HIF1a re-expression41
RCC 7860 HIF2a over-expression31
RCC 7860 vector31
glomerular visceral epithelial cell11
primary cell
endothelial cell of umbilical vein8211
epithelial cell of proximal tubule4
kidney glomerular epithelial cell11
kidney tubule cell11
Heart fetal (cardiac muscle cell)1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)111
cardiomyocytes (cardiac muscle cell)111
adipocyte2
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