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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 46ChIP-seq
  • 30total RNA-seq
  • 22ATAC-seq
  • 10DNase-seq
  • 5Hi-C
  • 4pCHi-C
  • 1FAIRE-seq
Assay category
  • 46DNA binding
  • 33DNA accessibility
  • 30Transcription
  • 53D chromatin structure
Target of assay
  • histone
  • 196histone modification
  • 141narrow histone mark
  • 55broad histone mark
  • 39control
  • 7recombinant protein
  • 7transcription factor
Date released
  • 715February, 2021
  • 318November, 2017
  • 314May, 2020
  • 299August, 2021
  • 259May, 2021
  • 213August, 2017
  • 205February, 2023
  • 200May, 2022
  • 199June, 2019
  • 168July, 2018
  • 118October, 2019
  • 108July, 2019
  • 88November, 2018
  • 63December, 2017
  • 61March, 2020
  • 59September, 2020
  • 51November, 2019
  • 49April, 2018
  • 47September, 2023
  • 46October, 2018
  • 41September, 2018
  • 35December, 2018
  • 28May, 2019
  • 25February, 2020
  • 23February, 2018
  • 23January, 2019
  • 20April, 2019
  • 19April, 2020
  • 16January, 2021
  • 16November, 2020
  • 15May, 2023
  • 11October, 2017
  • 11September, 2017
  • 10December, 2019
  • 8January, 2018
  • 7August, 2020
  • 5March, 2019
  • 5March, 2023
  • 5May, 2024
  • 4August, 2018
  • 4October, 2022
  • 3June, 2018
  • 1August, 2022
Available data
  • 77bam
  • 38bigWig
  • 22bed narrowPeak
  • 16tsv
  • 12bigBed narrowPeak
  • 9tagAlign
  • 8bed bed3+
  • 7bed broadPeak
  • 7bigBed broadPeak
  • 4hic
  • 3bedpe bed3+
  • 1hdf5
  • 1tar
Organism
  • 118Homo sapiens
Biosample type
  • 74tissue
  • 23cell line
  • 13primary cell
  • 8in vitro differentiated cells
Organ
  • 26limb
  • 22kidney
  • 19eye
  • 18nerve
  • 14blood vessel
  • 14epithelium
  • 14vasculature
  • 11pancreas
  • 9brain
  • 8artery
  • 6vein
  • 3connective tissue
  • 3heart
  • 2liver
  • 1adipose tissue
  • 1pituitary gland
  • 1skin of body
Project
  • 118AMP
Genome assembly (visualization)
  • 46hg19
  • 38GRCh38
Lab
  • 118AMP-T2D consortium
Audit category:
  • 21inconsistent ontology term
  • 1audit script error
Audit category:
  • 1inconsistent assembly
target.investigated_as!
  • histone
BIOSAMPLE
ASSAY

118 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
FAIRE-seq
tissue
islet of Langerhans14134
tibial nerve11412
tibial artery512
heart21
kidney2
cell line
Panc1611
RCC 7860 HIF1a re-expression41
RCC 7860 HIF2a over-expression31
RCC 7860 vector31
glomerular visceral epithelial cell11
primary cell
endothelial cell of umbilical vein2211
kidney glomerular epithelial cell11
kidney tubule cell11
Heart fetal (cardiac muscle cell)1
Liver fetal (hepatocyte)1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)111
cardiomyocytes (cardiac muscle cell)111
adipocyte2
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