Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 2640pQTL
  • 1684candidate regulatory elements
  • 1341target gene predictions
  • 971histone modifications
  • 929chromatin state
  • 898accessible chromatin
  • 809binding sites
  • 685gene expression
  • 189eQTL
  • 172differential activity
  • 141variant allelic effects
  • 84Fine-mapped variants
  • 13caQTL
  • 7sQTL
  • 5hQTL
  • 4variant to gene
  • 3meQTL
  • 3other
  • 1representative DNase hypersensitivity sites
Date released
  • 2639February, 2025
  • 2554February, 2021
  • 2469September, 2022
  • 389May, 2021
  • 378February, 2024
  • 332November, 2021
  • 286September, 2023
  • 284June, 2020
  • 154May, 2020
  • 128August, 2021
  • 128March, 2020
  • 106January, 2022
  • 100October, 2022
  • 89January, 2020
  • 70March, 2023
  • 64February, 2020
  • 54January, 2021
  • 48May, 2022
  • 44November, 2022
  • 40May, 2024
  • 38March, 2025
  • 35August, 2017
  • 32February, 2023
  • 30March, 2024
  • 19April, 2020
  • 14November, 2019
  • 14October, 2019
  • 9August, 2018
  • 9May, 2019
  • 8April, 2019
  • 3November, 2020
  • 3September, 2018
  • 2January, 2018
  • 2January, 2025
  • 1August, 2020
  • 1August, 2022
  • 1July, 2020
  • 1June, 2021
Available data
  • 6014bed bed3+
  • 3572tsv
  • 855bed bed9
  • 536bigWig
  • 108txt
  • 40bigBed bed9
  • 33bed bed9+
  • 26csv
  • 16bigBed narrowPeak
  • 4bam
  • 3bed gappedPeak
  • 3xls
Organism
  • 10531Homo sapiens
Collection Tags
  • 2635UK_Biobank
  • 2457EpiMap
  • 1830ChIP-Atlas
  • 954ENCODE
  • 634DGA
  • 533AMP
  • 418T1D
  • 405T2DKP
  • 281KPMP
  • 217BLUEPRINT
  • 174 T2DKP
  • 1744DN
  • 151GTEx
  • 111T2D
  • 101eQTLCatalogue
  • 100CMDGA
  • 67HPAP
  • 43STARNET
  • 26FNIH_projects-heart
  • 12FNIH_projects-liver
  • 12ROADMAP
Biosample type
  • 5301tissue
  • 2503primary cell
  • 2299cell line
  • 470in vitro differentiated cells
  • 4stem cell
Organ
  • 2913vasculature
  • 2859bodily fluid
  • 2848blood
  • 2848blood vessel
  • 2658vein
  • 958epithelium
  • 652kidney
  • 480connective tissue
  • 467brain
  • 380musculature of body
  • 311lung
  • 289intestine
  • 277pancreas
  • 257heart
  • 244limb
  • 215embryo
  • 204skin of body
  • 174large intestine
  • 163liver
  • 146extraembryonic component
  • 119stomach
  • 109eye
  • 99adipose tissue
  • bone element
  • 87mammary gland
  • 84small intestine
  • 83uterus
  • 79artery
  • 78prostate gland
  • 73adrenal gland
  • 73placenta
  • 64penis
  • 64ureter
  • 62lymph node
  • 50gonad
  • 49thymus
  • 45esophagus
  • 43spinal cord
  • 34spleen
  • 26testis
  • 25nerve
  • 24lymphatic vessel
  • 24lymphoid tissue
  • 23ovary
  • 23thyroid gland
  • 19mouth
  • 18skeleton
  • 16bronchus
  • 13bone marrow
  • 13breast
  • 13pituitary gland
  • 10tongue
  • 10urinary bladder
  • 10vagina
  • 5trachea
  • 4nose
  • 1pericardium
Project
  • 9871AMP
  • 332ENCODE
  • 281KPMP
  • 58T1D
  • 19LungMap
  • 13community
  • 5ITG
Genome assembly (visualization)
  • 6917hg19
  • 1886GRCh38
  • 4hg18
organ_slims!
  • bone element
type!!
  • Software
BIOSAMPLE
TYPE

10579 results

search-icontable-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
binding sites
histone modifications
accessible chromatin
variant allelic effects
tissue
whole blood2635
heart372012151
stomach40211193
kidney2914216101
brain291631821
primary cell
monocyte286181
common myeloid progenitor, CD34-positive271413
CD8-positive, alpha-beta T cell753014
B cell171086
endothelial cell371152
cell line
HeLa-S355531
A549211911812
H1-hESC1391112
K5627231712
MCF-7962513
in vitro differentiated cells
neural progenitor cell5515410
hematopoietic multipotent progenitor cell191011011
adipocyte461641
embryonic stem cell11561
cardiomyocytes
stem cell
H1-hESC1
mesenchymal stem cell1
mesendoderm1
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego