Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

BIOSAMPLE

	ASSAY
3849 results Clear Filters	total RNA-seq	ChIP-seq	ATAC-seq	single cell RNA-seq	DNase-seq	RNA microarray	snATAC-seq	WGBS	pCHi-C	Hi-C	small RNA-seq	GRO-seq	Capture-C	MeRIP-seq	FAIRE-seq	snDrop-seq	HiChIP	RRBS	CRISPR RNA-seq	CRISPR genome editing followed by sgRNA sequencing	...and 7 more
tissue
islet of Langerhans	292	71	48	6	1		6		4	3				4	1
adipose tissue	382	2	3					3	1
liver	166	109	20	1	2			3	1	1	1
kidney	49	27	75	64	13		2			1					1
bone element						84
heart left ventricle	3	34	2	18	3			4	1	1
left cardiac atrium		40		18	1
bone tissue	58
body of pancreas	3	28	4		4			2			2
coronary artery	1	4	36		2
tibial nerve	5	35	1		2
subcutaneous abdominal adipose tissue		36						3
heart right ventricle	1	13		17	1			2	1	1
heart	3	9		1	18			1		1	1
skeletal muscle tissue	1	22	1	1			2				1							2
pancreas	2	16			2		2	2	1	1					1
right cardiac atrium		6		18				1	1
spleen		20	1		1			2	1
tibial artery	1	19	1		2
aorta	1	13		4				2	1	1
subcutaneous adipose tissue	7	12	1			1					1
retina	3		15		3
lung				9			10		1
muscle of leg		6			13			1
omental fat pad	5	11	1		2						1
ascending aorta	2	16			1
muscle of arm					17
endocrine pancreas		16
right lobe of liver	3	8	1		2						2
right atrium auricular region	3	9	1		2
pigmented layer of retina	2		12
germinal matrix		12
thoracic aorta	2	9	1
white adipose tissue		12
renal cortex interstitium					11
renal pelvis					10
right kidney					10
left kidney					9
gastrocnemius medialis	1									4
psoas muscle	2								1	2
aortic valve				4
left renal cortex interstitium					4
left renal pelvis					4
pulmonary valve				4
right renal pelvis					4
tricuspid valve				4
cardiac atrium	1			2
cardiac ventricle	1			2
middle temporal gyrus		3
mitral valve				3
occipital lobe	1				1						1
right renal cortex interstitium					3
visceral abdominal adipose tissue	3
acetabular part of hip bone	1		1
gyrus rectus		2
ilium	1		1
interventricular septum				2
ischium	1		1
metanephros	1										1
parietal lobe	1										1
precuneus cortex		2
pubis	1		1
pulmonary artery				2
supramarginal gyrus		2
white matter		2
C1 segment of cervical spinal cord	1
adipose tissue(adipose white tissue)			1
adrenal gland									1
bladder (urinary bladder)									1
cuneus		1
distal epiphysis			1
distal epiphysis of femur			1
distal epiphysis of humerus			1
distal epiphysis of tibia			1
esophagus									1
forelimb muscle					1
gastric (mucosa of stomach)									1
hindlimb muscle					1
inferior temporal gyrus		1
kidney (Cortex-Medulla)																1
kidney (cortex)																1
kidney (medulla)																1
kidney interstitium						1
left ventricle myocardium	1
lingual gyrus		1
orbital gyrus		1
ovary									1
paraterminal gyrus		1
postcentral gyrus		1
proximal epiphysis			1
proximal epiphysis of femur			1
proximal epiphysis of humerus			1
proximal epiphysis of tibia			1
renal glomerulus						1
sigmoid colon									1
small intestine									1
superior occipital gyrus		1
superior temporal gyrus					1
thymus									1
primary cell
monocyte	54	85	15
pancreatic alpha cell	52	13	35	12				25		1
Langerhans cell				85			48
pancreatic beta cell	21	12	23	12				16		1
CD8-positive, alpha-beta T cell	4	33	2						1
exocrine cell	39
pancreatic acinar cell	4	8	9	12						1
pancreatic ductal cell	4	13	4	10
pancreatic endocrine cell		23
pancreatic delta cell				11
epithelial cell of proximal tubule	1	8
osteoblast	5		2		1				1
pancreatic polypeptide-secreting cell				9
pancreatic cell				8
peripheral blood mononuclear cell							8
mesenchymal stem cell		7
mesenchymal cell				6
cardiac fibroblast		4			1
hepatocyte		4			1
B cell	2		2
T follicular helper cell	2		2
T-helper 1 cell	2		2
T-helper 17 cell	2		2
T-helper 2 cell	2		2
central memory CD8-positive, alpha-beta T cell	2		2
effector CD4-positive, alpha-beta T cell	2		2
effector T cell	2		2
effector memory CD8-positive, alpha-beta T cell	2		2
endothelial cell of umbilical vein		1			1					2
gamma-delta T cell	2		2
kidney tubule cell	1				3
mature natural killer cell	2		2
memory B cell	2		2
memory T cell	2		2
memory regulatory T cell	2		2
naive B cel	2		2
naive regulatory T cell	2		2
naive thymus-derived CD4-positive, alpha-beta T cell	1	2							1
naive thymus-derived CD8-positive, alpha-beta T cell	2		2
pancreatic stellate cell				4
regulatory T cell	2		2
gabaergic neuron			3
glutamatergic neuron			3
kidney glomerular epithelial cell	1				2
microglial cell/astrocyte			3
oligodendrocyte			3
co-expressing pancreatic endocrine cell				2
endothelial cell				2
enteroendocrine cell				2
immature natural killer cell	1		1
kidney epithelial cell	1	1
mast cell				2
mesenchymal stem cell of adipose	1										1
myeloid dendritic cell	1		1
natural killer cell	1		1
neutrophil	1	1
pancreatic epsilon cell				2
plasma cell	1		1
plasmacytoid dendritic cell	1		1
skeletal muscle cell		1			1
skeletal muscle satellite cell	1										1
unclassified exocrine cell				2
unclassified pancreatic endocrine cell				2
Heart fetal (cardiac muscle cell)			1
Liver fetal (hepatocyte)			1
alternatively activated macrophage									1
cardiac atrium fibroblast	1
cardiac muscle cell		1
cardiac ventricle fibroblast	1
chondrocytes										1
embryonic stem cell	1
endothelial cell of coronary artery	1
glomerular endothelial cell	1
hepatic stellate cell					1
kidney capillary endothelial cell					1
macrophage									1
mesangial cell	1
pericardium fibroblast	1
renal cortical epithelial cell	1
retinal pigment epithelial cell		1
smooth muscle cell of the coronary artery	1
in vitro differentiated cells
adipocyte	5	67	4										1
cardiomyocytes	59	3
embryonic stem cell	7	40	5						1
neural progenitor cell	7	21	10
pancreatic endoderm	4	15										1
induced pluripotent stem cell	9
definitive endodermal cell	2	5										1
primitive gut cell	2	5										1
chondrocyte			5
endocrine cell	2	3
posterior foregut	2	3
Hepatic endoderm		4
immature adipocyte	2		2
Posterior foregut		2										1
pancreatic PP cell		3
cardiomyocytes (cardiac muscle cell)	1								1
osteoblast			1										1
preadipocyte	1		1
Pancreatic progenitors (progenitor cell of endocrine pancreas)			1
cardiac fibroblast	1
endothelial cell	1
hematopoietic multipotent progenitor cell	1
intermediate cardiomyocytes	1
intermediate endothelial cell	1
intermediate smooth muscle cell	1
islet precursor cell	1
mesodermal cell (lineage marker-negative)	1
mesodermal cell (pacemaker intermediate)	1
smooth muscle cell	1
stem cell	1
white fat cell									1
cell line
EndoC_BH1	31	13	17							1			2				2			1
smooth muscle cell of the coronary artery	52	4	8
HepG2	9	43								1
GM12878		4	1
EndoC-BH1
Panc1		2
iPSC derived cell line		2
MIN6
Synthesized DNA
early embryonic cell	1
stem cell
SB Ad3.1																			1
hESC												1
mesenchymal stem cell									1
mesendoderm									1
neural progenitor cell (neural stem cell)									1
trophoblast									1

Experiment Matrix

Assay

Assay category

Target of assay

Date released

Available data

Organism

Biosample type

Organ

Project

Genome assembly (visualization)

Lab

Audit category:

Audit category:

Audit category:

organ_slims!

replication_type!

3849 results