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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 706ChIP-seq
  • 224total RNA-seq
  • 194ATAC-seq
  • 92single cell RNA-seq
  • 47pCHi-C
  • 35DNase-seq
  • 17RRBS
  • 16Hi-C
  • 12snATAC-seq
  • 10MeRIP-seq
  • 8WGBS
  • 7small RNA-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3FAIRE-seq
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 706DNA binding
  • 323Transcription
  • 244DNA accessibility
  • 26DNA methylation
  • 163D chromatin structure
Target of assay
  • 417transcription factor
  • 216histone
  • 216histone modification
  • 115narrow histone mark
  • 101broad histone mark
  • 88recombinant protein
  • 79RNA binding protein
  • 73control
  • 32chromatin remodeller
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 289November, 2017
  • 148May, 2021
  • 144May, 2020
  • 86October, 2019
  • 66August, 2021
  • 64November, 2018
  • 62December, 2017
  • 56August, 2017
  • 52February, 2023
  • 48June, 2019
  • 46March, 2020
  • 45July, 2018
  • 43February, 2021
  • 43July, 2019
  • 39April, 2018
  • 28December, 2018
  • 24November, 2019
  • 21January, 2019
  • 14May, 2019
  • 13February, 2020
  • 10November, 2020
  • 8October, 2018
  • 7December, 2019
  • 5January, 2021
  • 5March, 2019
  • 3August, 2018
  • 3October, 2022
  • 2April, 2019
  • 2May, 2022
  • 2September, 2017
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1October, 2017
  • 1September, 2018
Available data
  • 1090bam
  • 1006bigWig
  • 671bed narrowPeak
  • 624fastq
  • 508bigBed narrowPeak
  • 345tsv
  • 105bed broadPeak
  • 105tagAlign
  • 103bigBed broadPeak
  • 90bed bed3+
  • 18bed bedMethyl
  • 18bigBed bedMethyl
  • 13bedpe bed3+
  • 12hic
  • 8txt
  • 7bed bedgraph
  • 6bed bed3
  • 4tar
  • 3cool
  • 2csv
  • 2hdf5
  • 2ibed
  • 1bedpe
Organism
  • 1383Homo sapiens
Biosample type
  • 463cell line
  • 459primary cell
  • 274tissue
  • 183in vitro differentiated cells
  • 4stem cell
Organ
  • 426liver
  • 201pancreas
  • 169epithelium
  • brain
  • 68connective tissue
  • 58blood
  • 58bodily fluid
  • 58kidney
  • 49vasculature
  • 44blood vessel
  • 41heart
  • 22musculature of body
  • 19vein
  • 17adipose tissue
  • 13embryo
  • 11artery
  • 9bone element
  • 8limb
  • 8skeleton
  • 7eye
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 1212AMP
  • 161T1D
  • 9HPAP
  • 1ITG
Genome assembly (visualization)
  • 1087hg19
  • 935GRCh38
Lab
  • 1165AMP-T2D consortium
  • 173Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Klaus Kaestner, Upenn
  • 7Struan F.A. Grant, CHOP
  • 4Katalin Susztak, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 133inconsistent ontology term
  • 28inconsistent control
  • 6audit script error
  • 1inconsistent replicate
Audit category:
  • 26missing controlled_by
Audit category:
  • 38inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
organ_slims!
  • brain
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

1383 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
pCHi-C
DNase-seq
RRBS
Hi-C
snATAC-seq
MeRIP-seq
WGBS
small RNA-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
FAIRE-seq
Capture-C
snDrop-seq
DNAme array
cell line
HepG2335512112
GM1287856
EndoC_BH122263
Panc11111
H1-hESC8
primary cell
monocyte4726211
naive thymus-derived CD4-positive, alpha-beta T cell21221
CD4-positive, alpha-beta memory T cell22
endothelial cell of umbilical vein16111
skeletal muscle myoblast15121
tissue
islet of Langerhans221037611234
liver4231111
heart531411
kidney12141
body of pancreas71
in vitro differentiated cells
neural progenitor cell21710
embryonic stem cell11551
cardiac precursors (cardiac muscle cell)1911
adipocyte71811
hepatocyte15
stem cell
hESC3
mesenchymal stem cell1
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