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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 174total RNA-seq
  • 143ChIP-seq
  • 104ATAC-seq
  • 89single cell RNA-seq
  • 26pCHi-C
  • 18DNase-seq
  • 9Hi-C
  • 7small RNA-seq
  • 5snATAC-seq
  • 4MeRIP-seq
  • 2Capture-C
  • 2FAIRE-seq
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 270Transcription
  • 143DNA binding
  • 129DNA accessibility
  • 93D chromatin structure
  • 1DNA methylation
Target of assay
  • 96histone
  • 96histone modification
  • 57narrow histone mark
  • 39broad histone mark
  • 33transcription factor
  • 16control
  • 9RNA binding protein
  • 2nucleotide modification
Date released
  • 134May, 2021
  • 88May, 2020
  • 48August, 2021
  • 46February, 2023
  • 44July, 2018
  • 39April, 2018
  • 33August, 2017
  • 30March, 2020
  • 27July, 2019
  • 21June, 2019
  • 18October, 2019
  • 13February, 2020
  • 11February, 2021
  • 5March, 2019
  • 4November, 2020
  • 3August, 2018
  • 3December, 2017
  • 3October, 2022
  • 2January, 2021
  • 2May, 2022
  • 2November, 2018
  • 2September, 2017
  • 1April, 2019
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1November, 2019
  • 1October, 2017
  • 1October, 2018
  • 1September, 2018
Available data
  • 434bam
  • 418bigWig
  • 280tsv
  • 132bed narrowPeak
  • 129fastq
  • 79tagAlign
  • 59bed bed3+
  • 30bigBed narrowPeak
  • 17bed broadPeak
  • 15bigBed broadPeak
  • 8hic
  • 7bedpe bed3+
  • 5bed bed3
  • 5txt
  • 3cool
  • 2csv
  • 1bedpe
Organism
  • 586Homo sapiens
Biosample type
  • 302primary cell
  • 171tissue
  • 112in vitro differentiated cells
  • 1stem cell
Organ
  • 138pancreas
  • 81epithelium
  • brain
  • 57connective tissue
  • 25heart
  • 19kidney
  • 17adipose tissue
  • 16liver
  • 9musculature of body
  • 8bone element
  • 8skeleton
  • 7blood vessel
  • 7vasculature
  • 4artery
  • 3eye
  • 3limb
  • 2blood
  • 2bodily fluid
  • 2embryo
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1nerve
  • 1ovary
  • 1pericardium
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
  • 1vein
Project
  • 444AMP
  • 138T1D
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 447hg19
  • 378GRCh38
Lab
  • 412AMP-T2D consortium
  • 154Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 4Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 50inconsistent ontology term
  • 4audit script error
Audit category:
  • 14missing controlled_by
Audit category:
  • 4inconsistent control read length
organ_slims!
  • brain
BIOSAMPLE
ASSAY

586 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
pCHi-C
DNase-seq
Hi-C
small RNA-seq
snATAC-seq
MeRIP-seq
Capture-C
FAIRE-seq
snDrop-seq
DNAme array
primary cell
monocyte264721
pancreatic alpha cell111
pancreatic beta cell111
pancreatic delta cell10
pancreatic acinar cell81
tissue
islet of Langerhans10221861224
liver26111
heart21411
pancreas11111
kidney121
in vitro differentiated cells
neural progenitor cell72110
embryonic stem cell51141
adipocyte1741
cardiomyocytes12
induced pluripotent stem cell9
stem cell
mesenchymal stem cell1
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